The
Calicivirus
Pages
Genus: Lagovirus
Species: Rabbit hemorrhagic disease virus
|
Rabbit hemorrhagic disease virus (RHDV) |
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|---|---|---|---|---|---|---|
| Virus | Strain | Region |
Length |
Accession No. | Reference | Comments |
| AUSTRIA | ||||||
| RHDV | Austria 89b | capsid(p) | 344 | U65317 | Nowotny et al., 1997 | |
| RHDV | 214/90 (Austria 1990) | ? | ? | N/A | Milton et al., 1992 | |
| RHDV | Austria 90 | capsid(p) | 344 | U65318 | Nowotny et al., 1997 | |
| RHDV | Austria 91a | capsid(p) | 344 | U65319 | Nowotny et al., 1997 | |
| RHDV | Austria 91b | capsid(p) | 344 | U65320 | Nowotny et al., 1997 | |
| RHDV | Austria 93a | capsid(p) | 344 | U65321 | Nowotny et al., 1997 | |
| RHDV | Austria 93b | capsid(p) | 344 | U65322 | Nowotny et al., 1997 | |
| RHDV | Austria 93c | capsid(p) | 344 | U65323 | Nowotny et al., 1997 | |
| RHDV | Austria 95a | capsid(p) | 344 | U65324 | Nowotny et al., 1997 | |
| RHDV | Austria 95b | capsid(p) | 344 | U65325 | Nowotny et al., 1997 | |
| BELGIUM | ||||||
| RHDV | Belgium 90 | capsid(p) | 344 | U65326 | Nowotny et al., 1997 | |
| RHDV | Belgium 95 | capsid(p) | 344 | U65327 | Nowotny et al., 1997 | |
| CHINA, P.R. | ||||||
| RHDV | China 89 | capsid(p) | 344 | U65328 | Nowotny et al., 1997 | |
| CZECHOSLOVAKIA | ||||||
| RHDV | CAPM V-351 (Czechoslovakia 1987) |
capsid(p)+small basic protein |
1100 | Z11535 | Milton et al., 1992 | |
| CG | 7437 | U54983 | Gould et al., 1997 | |||
| RHDV | Czech R88 | capsid(p) | 344 | U65329 | Nowotny et al., 1997 | |
| RHDV | Czech R92 | capsid(p) | 344 | U65330 | Nowotny et al., 1997 | |
| EGYPT | ||||||
| RHDV | E1 (Egypt/91) | capsid (p) | 465 | N/A | Guittr‚ et al., 1995 | |
| FRANCE | ||||||
| RHDV | Haute-Saone, France 1988 | capsid | 1740 | U49726 | Fischer et al., 1997 | |
| RHDV | SD (France 1989 - wild rabbit) | CG | 7437 | Z29514 | Rasschaert et al., 1994 | |
| RHDV | 3237 (Essonne, France/92) | capsid (p) | 465 | N/A | Guittr‚ et al., 1995 | |
| RHDV | F2 (France) | capsid (p) | 465 | N/A | Guittr‚ et al., 1995 | |
| RHDVa | 99-05 | capsid | 1737 | AJ302016 | Le Gall-Recule et al., 2003 | |
| RHDV | 06-11 | capsid | 1734 | AM268419 | Le Gall-Recule et al., 2011 | |
| RHDV | France/Or08/2008 | capsid | 1740 | KC595270 | Puggioni et al., 2013 | |
| GERMANY | ||||||
| RHDV | FRG (Germany 1989) | CG | 7437 | M67473 | Meyers et al., 1991 | |
| RHDV | Germany 90 | capsid(p) | 344 | U65331 | Nowotny et al., 1997 | |
| RHDV | Germany 94a | capsid(p) | 344 | U65332 | Nowotny et al., 1997 | |
| RHDV | Germany 94b | capsid(p) | 344 | U65333 | Nowotny et al., 1997 | |
| RHDV | Eisenhuettenstadt (Germany) | capsid | 1740 | Y15440 | Schirrmeier et al., unpublished | |
| RHDV | Frankfurt (Germany) | capsid | 1740 | Y15424 | Schirrmeier et al., unpublished | |
| RHDV | Hartmannsdorf (Germany) | capsid | 1740 | Y15425 | Schirrmeier et al., unpublished | |
| RHDV | Hagenow (Germany) | capsid | 1740 | Y15441 | Schirrmeier et al., unpublished | |
| RHDV | Meiningen (Germany) | capsid | 1740 | Y15426 | Schirrmeier et al., unpublished | |
| RHDV | Triptis (Germany) | capsid | 1740 | Y15442 | Schirrmeier et al., unpublished | |
| RHDV | Wriezen (Germany) | capsid | 1740 | Y15427 | Schirrmeier et al., unpublished | |
| HUNGARY | ||||||
| RHDV | Hungary 90 | capsid(p) | 344 | U65334 | Nowotny et al., 1997 | |
| IRELAND | ||||||
| RHDV | Ireland 95a | capsid(p) | 344 | U65335 | Nowotny et al., 1997 | |
| RHDV | Ireland 95b | capsid(p) | 344 | U65336 | Nowotny et al., 1997 | |
| RCV | Lambay Island 2005 | capsid(p) | 511 | DQ367359 | Forrester et al., 2007 | |
| ISRAEL | ||||||
| RHDV | Israel 90 | capsid(p) | 344 | U65337 | Nowotny et al., 1997 | |
| ITALY | ||||||
| RHDV | BS89 | CG | 7437 | X87607 | Rossi, unpublished | |
| RCV | Rabbit calicivirus (Italy, 1995) | capsid | 1731 | X96868 | Capucci et al., 1996 | |
| RHDV | Rainham | capsid | 1740 | AJ006019 | Riboli et al., unpublished | |
| RHDV | Italy 90a | capsid(p) | 344 | U65338 | Nowotny et al., 1997 | |
| RHDV | Italy 90b | capsid(p) | 344 | U65339 | Nowotny et al., 1997 | |
| RHDV | Italy 93 | capsid(p) | 344 | U65340 | Nowotny et al., 1997 | |
| RHDV | Bs97 (Italy 1997) | capsid(p) | ? | N/A | Capucci et al., 1998 | |
| RHDV | Bg97 (Italy 1997) | capsid(p) | ? | N/A | Capucci et al., 1998 | |
| RHDVa | Vt97 (Italy 1997) | capsid(p) | ? | N/A | Capucci et al., 1998 | antigenic variant |
| RHDVa | Pv97 (Italy 1997) | capsid(p) | ? | N/A | Capucci et al., 1998 | antigenic variant |
| RHDV | Ca11 (2011) | capsid | 1740 | KC345614 | Puggioni et al., 2013 | |
| KOREA | ||||||
| RHDV | Korea 90 | capsid(p) | 344 | U65341 | Nowotny et al., 1997 | |
| RHDV | Korea 93 | capsid(p) | 344 | U65342 | Nowotny et al., 1997 | |
| MEXICO | ||||||
| RHDV | Mexico/89 | CG | 7307 | AF295785 | Babcock et al., unpublished | |
| RHDV | Mexico 90 | capsid(p) | 344 | U65343 | Nowotny et al., 1997 | |
| RHDV | Mexico 93 | capsid(p) | 344 | U65344 | Nowotny et al., 1997 | |
| PORTUGAL | ||||||
| RHDV | CB194/2006/POR | CG | JX886001 | Abrantes et al., 2012 | ||
| RHDV | CB137/1995/POR | CG | JX886002 | Abrantes et al., 2012 | ||
| REUNION | ||||||
| RHDV | 00139 (Reunion) | capsid | 1686 | AJ303106 | Le Gall-Recule et al., unpub. | |
| SLOVAKIA | ||||||
| RHDV | Slovak R88 | capsid(p) | 344 | U65345 | Nowotny et al., 1997 | |
| SPAIN | ||||||
| RHDV | AST/89 (Spain 1989) | capsid | 445 | X73046; S60954 | Parra et al., 1993 | |
| pol(p)+capsid | 2483 | Z24757 | Boga et al., 1992, 1994 | |||
| CG | 7437 | Z49271 | Casais et al., unpub | |||
| RHDV | MC-89 (Spain/89) | capsid | 2037 | L48547 | Viaplana and Villaverde, 1996 | |
| RHDV | Spain 90 | capsid(p) | 344 | U65346 | Nowotny et al., 1997 | |
| RHDV | Spain 95a | capsid(p) | 344 | U65347 | Nowotny et al., 1997 | |
| RHDV | Spain 95b | capsid(p) | 344 | U65348 | Nowotny et al., 1997 | |
| RHDV | Spain 95c | capsid(p) | 344 | U65349 | Nowotny et al., 1997 | |
| SWEDEN | ||||||
| RHDV | Sweden 90 | capsid(p) | 344 | U65350 | Nowotny et al., 1997 | |
| RHDV | Sweden 94 | capsid(p) | 344 | U65351 | Nowotny et al., 1997 | |
| SWITZERLAND | ||||||
| RHDV | Switzerland 95a | capsid(p) | 344 | U65352 | Nowotny et al., 1997 | |
| RHDV | Switzerland 95b | capsid(p) | 344 | U65353 | Nowotny et al., 1997 | |
| UNITED KINGDOM | ||||||
| RHDV | UK92 | capsid(p) | 344 | U65354 | Nowotny et al., 1997 | |
| RHDV | UK94 | capsid(p) | 344 | U65355 | Nowotny et al., 1997 | |
| RCV | Ashington | capsid(p) | 521 | AF454050 | Moss et al., 2002 | |
| UNITED STATES OF AMERICA | ||||||
| RHDV | Iowa/2000 (Crawford County) | CG | 7467 | AF258618 | Neilan et al., unpublished | |
| RHDV | MRCV/Michigan/2001 | CG | 7387 | GQ166866 | Bergin et al., 2009 | |
| Rabbit hemorrhagic disease
virus 2 (RHDV-2) |
||||||
| Virus | Strain | Region |
Length |
Accession No. | Reference | Comments |
| FRANCE | ||||||
| RHDV-2 | France/10–05/2010 | capsid | 1740 | FR819781 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | France/10–01/2010 | capsid | 1740 | HE800529 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | France/10–07/2010 | capsid | 1740 | HE800530 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | France/10–28/2010 | capsid | 1740 | HE800531 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | France/10–32/2010 | capsid | 1740 | HE800532 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | France/10–08/2010 | capsid | 1740 | HE819400 | Le Gall-Recule et al., 2013 | |
| ITALY | ||||||
| RHDV-2 | Italy/Ud11/2011 | capsid | 1734 | JQ929052 | Le Gall-Recule et al., 2013 | |
| RHDV-2 | Italy/Vs11/2011 | capsid | 1772 | JX106023 | Puggioni et al., 2013 | |
| RHDV-2 | Italy/Vs11_1/2011 | capsid | 1740 | KC345612 | Puggioni et al., 2013 | |
| RHDV-2 | Italy/Vs11_2/2011 | capsid | 1740 | KC345613 | Puggioni et al., 2013 | |
| RHDV-2 | Italy/Ss11/2011 | capsid | 1740 | KC345611 | Puggioni et al., 2013 | |
| RHDV-2 | Italy/Tn12-1 | capsid | KC907712 | Puggioni et al., 2013 | ||
| Rabbit calicivirus A1
(RCV-A1) |
||||||
| Virus | Strain | Region |
Length |
Accession No. | Reference | Comments |
| AUSTRALIA | ||||||
| RCV-A1 | Australia/MIC-07/2007 | CG | 7422 | EU871528 | Strive et al., 2009 | |
| RCV-A1 | Australia/BUR1-1/2007 | capsid | 2704 | GU368888 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/CAT2-12/2007 | capsid | 2704 | GU368889 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/CAT3-4/2007 | capsid | 2704 | GU368890 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/CAT7-1/2007 | capsid | 2704 | GU368891 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/MIC3-3/2007 | capsid | 2704 | GU368892 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/MIC5-8/2007 | capsid | 2704 | GU368893 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/OC-13/2007 | capsid | 2704 | GU368894 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/OC-15/2007 | capsid | 2704 | GU368895 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/OC-26/2007 | capsid | 2704 | GU368896 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/OC-36/2007 | capsid | 2704 | GU368897 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/OC-7/2007 | capsid | 2704 | GU368898 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/V-5/2007 | capsid | 2704 | GU368899 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/V-8/2007 | capsid | 2704 | GU368900 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/WAU-1/2009 | capsid | 2704 | GU368901 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/BEN-35/2009 | capsid | 2704 | GU368902 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/GUN/2007 | capsid | 2594 | GU368903 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/CAT2-10/2007 | capsid | 2594 | GU368904 | Jahnke et al., 2010 | |
| RCV-A1 | Australia/CAT2-5/2007 | capsid | 2594 | GU368905 | Jahnke et al., 2010 | |
|
CG =
complete genome (p) = partial gene sequence N/A = not available on the EMBL/GenBank/DDBJ databases |
||||||
References
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