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Norwalk virus seqs
MNV seqs

Genus: Norovirus

    Species: Norwalk virus (NV)

    Candidate species: Swine (porcine enteric) calicvirus

    Candidate species: Murine norovirus (MNV)

human SRSV-group I
bovine enteric calicivirus (BoCV) (related to human SRSV group I)
human SRSV-group II
porcine enteric calicivirus  (PoCV) (related to human SRSV group II)
murine norovirus

 

Human Small Round Structured Virus group I (SRSV-I)
Virus Strain Region

Length

Accession No.

Reference Comments
Norwalk virus-related
SRSV-I NV/8FiiA/68/US (Norwalk virus)
(Serotype 1)
CG 7654 M87661 Jiang et al., 1993  
immunoreactive epitope gene, 5' end 380 M62825 Matsui et al., 1991  
SRSV-I KY-89/Japan partial helicase 241 L23827 Wang et al., 1994  
pol(p)+capsid+3'end 2516 L23828 Wang et al., 1994  
Southampton virus-related
SRSV-I Southampton/91/UK CG

7708

L07418

Lambden et al., 1993; Lambden et al., 1995  
Desert Sheild virus-related
SRSV-I DSV275/90/Saudi Arabia (Desert Sheild virus) pol(p) 364 U04538 Lew et al., 1994b  
SRSV-I DSV395/90/Saudi Arabia (Desert Sheild virus) pol(p)+capsid+3'end 2916 U04469 Lew et al., 1994b  
Others
SRSV-I Saratoga-7/92/at sea pol(p) 433 U07614 Lew et al., 1994a  
SRSV-I SA-1283/84/J pol(p) 430 L23832 Wang et al., 1994  
SRSV-I SpC11/91 pol(p) 266 Z29476 Norcott et al., 1994  
SRSV-I SpC1/90 pol(p) 266 Z29477 Norcott et al., 1994  
SRSV-I V Ward 1/90 pol(p) 266 Z29479 Norcott et al., 1994  
SRSV-I QAR1/92 pol(p) 266 Z29364 Norcott et al., 1994  
SRSV-I ThH1 1/91 pol(p) 266 Z29377 Norcott et al., 1994  
SRSV-I Fam 1/91 pol(p) 266 Z29374 Norcott et al., 1994  
SRSV-I MPH2/91 pol(p) 266 Z29376 Norcott et al., 1994  
SRSV-I Hu/NLV/Chiba 407/1987/JP 3' end of genome 1015 D38547 Utagawa et al., 1994  
CG 7697 AB042808 Someya et al., 2000  
SRSV-I MDV1/88/US pol(p) 433 U07612 Lew et al., 1994a  
SRSV-I GB-1/89/SA pol(p) 166 U31868 Wolfaardt et al., 1995  
SRSV-I NV-Pretoria-1/91/SA pol (p) 166 U33184 Wolfaardt et al., 1995  
SRSV-I HCalV 90a-No pol(p) 120 X89029 Stene-Johansen and Grinde, 1996  
SRSV-I HCalV 94b-No pol(p) 293 X89031 Stene-Johansen and Grinde, 1996  
SRSV-I HCalV 94cd-No pol(p) 293 X89032 Stene-Johansen and Grinde, 1996  
SRSV-I HCalV 95ab-No pol(p) 293 X89035 Stene-Johansen and Grinde, 1996  
SRSV-I BS4/Germany pol(p) 233 Y13731 Schreier et al., unpublished (a)  
SRSV-I BS5/Germany (HSS/3/97/DEU) pol(p) 298 Y14024 Schreier et al., unpublished (a)  
CG 7598 AF093797 Schreier et al., 2000  
SRSV-I JPN NV isolate pol(p) 118 D82338 Nakayama et al., 1996  
SRSV-I FL-11551 pol(p) 81 S82839 Ando et al., 1995  
SRSV-I MD-11821 pol(p) 81 S82841 Ando et al., 1995  
SRSV-I Hu/NLV/Stav/95/Nor capsid 1654 AF145709 Mymel and Rimstad, 2000  
Bovine enteric calicivirus (BoCV) (related to SRSV-I)
Virus Strain Region

Length

Accession No. Reference Comments
BoCV Jena virus 117/80 (Germany, 1980) CG 7338

AJ011099

Liu et al., 1999  
BoCV Bo/Newbury-2/76/UK pol(p)+capsid+small basic protein 3029

AF097917

Dastjerdi et al., 1999; Oliver et al., 2003 incorporating AF097918
BoCV CV521-OH pol(p) 484 AY151257 Smiley et al., 2003  
BoCV CV500-OH pol(p) 484 AY151258 Smiley et al., 2003  
BoCV CV514-OH pol(p) 484 AY151259 Smiley et al., 2003  
BoCV CV95-OH pol(p)+capsid+small basic protein 3629 AF542083 Smiley et al., 2003  
BoCV CV186-OH pol(p)+capsid+small basic protein 3633 AF542084 Smiley et al., 2003  
BoCV Bo/Penrith9/00/UK pol(p) 416 AY126469 Oliver et al., 2003  
BoCV Bo/Penrith24/00/UK pol(p) 416 AY126470 Oliver et al., 2003  
BoCV Bo/Penrith41/00/UK pol(p) 416 AY126471 Oliver et al., 2003  
BoCV Bo/Shrewsbury24/00/UK pol(p) 416 AY126472 Oliver et al., 2003  
BoCV Bo/Shrewsbury54/00/UK pol(p) 416 AY126473 Oliver et al., 2003  
BoCV Bo/Dumfries/94/UK pol(p)+capsid+small basic protein 2818 AY126474 Oliver et al., 2003  
BoCV Bo/Aberystwyth24/00/UK pol(p)+capsid+small basic protein 2818 AY126475 Oliver et al., 2003  
BoCV Bo/Penrith55/00/UK pol(p)+capsid+small basic protein 2818 AY126476 Oliver et al., 2003  
 
Human Small Round Structured Virus group II (SRSV-II)
Virus Strain Region

Length

Accession No. Reference Comments
Toronto virus-related
SRSV-II TV/91/Canada (Toronto virus - TV24) pol(p), complete capsid 2844 U02030 Lew et al., 1994c  
SRSV-II Auckland virus pol(p) 332 U34381 Regli et al., unpub.  
capsid 1698 U46039 Regli et al., unpub.  
SRSV-II Oth-25/89/Japan partial helicase 194 L23829 Wang et al., 1994  
pol(p)+capsid+3'end 2496 L23830 Wang et al., 1994  
SRSV-II MX/89/Mexico pol(p)+capsid 3299 U22498 Jiang et al., 1995b  
SRSV-II Arg320 pol(p)+capsid+ORF3 3312 AF190817 Jiang et al., 1999  
pol(p) 362 AF190818 Jiang et al., 1999  
Snow Mountain virus-related
SRSV-II SMV/76/US (Snow Mountain virus)
(Serotype 3)
pol (p) 430 L23831 Wang et al., 1994  
capsid 1626 U70059 King and Green, 1997  
SRSV-II Melksham/89/UK pol(p)+capsid 3435 X81879 Green et al., 1995  
Hawaii virus-related
SRSV-II Hu/NLV/GII/Hawaii virus/1971/US
(Serotype 2)
CG

7513

U07611

Lew et al., 1994a;
Pletneva et al., 2001
 
SRSV-II Chitta virus, strain Aichi76-96 capsid 1608 AB032758 Kobayashi et al., 2000b  
Bristol virus-related
SRSV-II Bristol/93/UK (B493) complete capsid 3881 X76716 Green et al., 1994  
SRSV-II Lordsdale/93/UK CG 7555 X86557 Dingle et al., 1995  
SRSV-II Hu/NLV/Camberwell/101922/94/AUS pol+capsid+ORF3 3868 U46500 Cauchi et al., 1996  
CG 7555 AF145896 Seah et al., 1999  
SRSV-II Grimsby capsid 1620 AJ004864 Green et al., unpublished  
Others
SRSV-II Hu/NLV/GII/MD145-12/1987/US CG 7556 AY032605 Green et al., 2002  
SRSV-II Hu/NLV/GII/MD101-2/1987/US capsid 1647 AY030312 Green et al., 2002  
SRSV-II Hu/NLV/GII/MD134-10/1987/US capsid 1647 AY030313 Green et al., 2002  
SRSV-II Hu/NLV/Amsterdam/98-18/1998/NET capsid 1611 AF195848 J. Vinje and M.P.G. Koopmans, unpub.  
SRSV-II YURI pol(p) 433 AB001929 Saito et al., 1998  
pol(p) 1001 AB009876 Saito et al., 1998  
SRSV-II Halifax-N122/95/CAN pol(p) 81 U87651 Drebot and Lee, unpublished  
SRSV-II 29/96/Napier/NZ pol(p) 314 U91525 Meekin and Low, unpublished  
SRSV-II Sask-N80/95/CAN pol(p) 81 U87652 Drebot and Lee, unpublished  
SRSV-II 925/92/UK pol(p) 430 L23826 Wang et al., 1994  
SRSV-II SpC3/90 pol(p) 266 Z29478 Norcott et al., 1994  
SRSV-II Fam 1/91 pol(p) 266 Z29375 Norcott et al., 1994  
SRSV-II 12C/92/UK pol(p) 430 L25111 Cubitt et al., 1994  
SRSV-II 3C/92/UK pol(p) 430 L25112 Cubitt et al., 1994  
SRSV-II 4S/90/UK pol(p) 430 L25113 Cubitt et al., 1994  
SRSV-II 5C/92/UK pol(p) 430 L25114 Cubitt et al., 1994  
SRSV-II MDV6/87/US pol(p) 291 U07613 Lew et al., 1994a  
SRSV-II NB24/91/SA pol (p) 365 U33182 Wolfaardt et al., 1995  
SRSV-II NB28/91/SA pol (p) 365 U33183 Wolfaardt et al., 1995  
SRSV-II HCalV 76-No pol (p) 120 X89024 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 80-No pol (p) 120 X89025 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 82-No pol (p) 120 X89026 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 84a-No pol (p) 120 X89027 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 84b-No pol (p) 120 X89028 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 94a-No pol (p) 293 X89030 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 94e-No pol (p) 293 X89033 Stene-Johansen and Grinde, 1996  
SRSV-II HCalV 94f-No pol (p) 293 X89034 Stene-Johansen and Grinde, 1996  
SRSV-II S017/94/UK pol(p) 109 Z73996 Green et al., 1997  
SRSV-II S020/94/UK pol(p) 109 Z73999 Green et al., 1997  
SRSV-II LA-oyst pol(p) 81 S82845 Ando et al., 1995  
SRSV-II JPNNV116 pol(p) 118 D82327 Nakayama et al., 1996  
SRSV-II JPNNV16 pol(p) 118 D82328 Nakayama et al., 1996  
SRSV-II JPNNV21 pol(p) 118 D82329 Nakayama et al., 1996  
SRSV-II JPNNV22 pol(p) 118 D82330 Nakayama et al., 1996  
SRSV-II JPNNV23 pol(p) 118 D82331 Nakayama et al., 1996  
SRSV-II JPNNV24 pol(p) 118 D82332 Nakayama et al., 1996  
SRSV-II JPNNV25 pol(p) 118 D82333 Nakayama et al., 1996  
SRSV-II JPNNV28 pol(p) 118 D82334 Nakayama et al., 1996  
SRSV-II JPNNV34 pol(p) 118 D82335 Nakayama et al., 1996  
SRSV-II JPNNV40 pol(p) 118 D82336 Nakayama et al., 1996  
SRSV-II JPNNV52 pol(p) 118 D82337 Nakayama et al., 1996  
SRSV-II M-2 pol(p) 298 Y13703 Schreier et al., unpublished (a)  
SRSV-II Hu/NLV/Carlton/042530/95/AUS ORF3 802 AF106021 Seah et al., 1999  
SRSV-II Hu/NLV/Carlton/046444/95/AUS ORF3 802 AF106022 Seah et al., 1999  
SRSV-II Hu/NLV/Mt Keira/025753/96/AUS ORF3 802 AF106023 Seah et al., 1999  
SRSV-II Hu/NLV/Goulburn Valley/G5175/84/AU ORF3 779 AF106024 Seah et al., 1999  
SRSV-II Aichi 124-89 capsid 1593 AB031013 Kobayashi et al., 2000a  
SRSV-II NLV/DIJON171/96 capsid 1620 AF472623 Nicollier-Jamot et al., unpublished  
SRSV-II NLV/GII/Langen1061/2002/DE CG 7558 AY485642 Hoehne et al., unpub.  
 
Not SRSV-I or SRSV-II, but somewhere in between
SRSV Hu/NLV/Alphatron/98-2/1998/NET capsid

1668

AF195847 Vinje and Koopmans, 2000  
 
Porcine enteric calicivirus (PoCV) (related to SRSV-II)
Virus Strain Region

Length

Accession No. Reference Comments
Swine calicivirus Sw43-97-J pol(p) 292 AB009412 Sugieda et al., 1998  
Swine calicivirus Sw/NLV/Sw43/1997/JP pol(p)+capsid 2429 AB074892 Sugieda et al., 1998 + unpubl.  
Swine calicivirus Sw48-97-J pol(p) 292 AB009413 Sugieda et al., 1998  
Swine calicivirus Sw584-97-J pol(p) 292 AB009414 Sugieda et al., 1998  
Swine calicivirus Sw918-97-J pol(p) 292 AB009415 Sugieda et al., 1998  
Swine calicivirus Sw/NLV/Sw918/1997/JP pol(p)+capsid 2429 AB074893 Sugieda et al., 1998 + unpubl.  
Swine calicivirus Sw/NLV/34/1998/NET pol(p) 145 AF194184 van der Poel et al., 2000  
Swine calicivirus Sw/NLV/VA34/1998/NL capsid 1641 AY077644 Vinje, unpublished  
 
Murine norovirus (MNV)
 
Human SRSVs - not sure in which group these belong
SRSV Asb1-1997-JP pol(p) 433 AB019261 Ohyama et al., unpub. (a)  
SRSV Cts1-1995-JP pol(p) 433 AB019262 Ohyama et al., unpub. (a)  
SRSV Cts1B-1995-JP pol(p) 433 AB019263 Ohyama et al., unpub. (a)  
SRSV Cts3B-1997-JP pol(p) 333 AB019264 Ohyama et al., unpub. (a)  
SRSV Cts2-1997-1997-JP pol(p) 333 AB019265 Ohyama et al., unpub. (a)  
SRSV Cts3A-1997-JP pol(p) 433 AB019266 Ohyama et al., unpub. (a)  
SRSV Ess2-1997-JP pol(p) 433 AB019267 Ohyama et al., unpub. (a)  
SRSV Khs1-1997-JP pol(p) 433 AB019268 Ohyama et al., unpub. (a)  
SRSV Mur1-1997-JP pol(p) 433 AB019269 Ohyama et al., unpub. (a)  
SRSV Mur2-1997-JP pol(p) 433 AB019270 Ohyama et al., unpub. (a)  
SRSV Mur3A-1997-JP pol(p) 433 AB019271 Ohyama et al., unpub. (a)  
SRSV Mur3B-1997-JP pol(p) 433 AB019272 Ohyama et al., unpub. (a)  
SRSV Mur4A-1998-JP pol(p) 433 AB019273 Ohyama et al., unpub. (a)  
SRSV Mur4B-1998-JP pol(p) 433 AB019274 Ohyama et al., unpub. (a)  
SRSV Sbt1-1997-JP pol(p) 433 AB019275 Ohyama et al., unpub. (a)  
SRSV Swr1-1998-JP pol(p) 433 AB019276 Ohyama et al., unpub. (a)  
SRSV Tbt1-1997-JP pol(p) 333 AB019277 Ohyama et al., unpub. (a)  
SRSV Wak1A-1997-JP pol(p) 433 AB019278 Ohyama et al., unpub. (a)  
SRSV Wak1B-1997-JP pol(p) 433 AB019279 Ohyama et al., unpub. (a)  
SRSV Hk1-1995-JP ORF-3 692 AB019251 Ohyama et al., unpub. (b)  
SRSV Hk2-1995-JP ORF-3 671 AB019253 Ohyama et al., unpub. (b)  
SRSV Hk3-1995-JP ORF-3 683 AB019252 Ohyama et al., unpub. (b)  
SRSV ? Capsid 1594 AB063325 Yoda et al., unpubl.  
 
CG = complete genome
(p) = partial gene sequence
N/A = not available on the EMBL/GenBank/DDBJ databases

References

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