The
Calicivirus
Pages
 Sapporo virus seqs
Home
Up

  Genus: Sapovirus
  Species: Sapporo virus
    classical human calicivirus (HuCV)
    porcine enteric calicivirus (PEC)
    mink enteric calicivirus (MEC)
    bat sapovirus
    California sea lion sapovirus
    Canine sapovirus
    Chimpanzee sapovirus
     
 
Sapporo virus (SV)
Virus Strain Region

Length

Accession No.

Reference Comments
SV-GI Sapporo/82/Japan pol (p) 551 S77903 Matson et al., 1995  
pol+capsid 3161 U65427 Numata et al., 1997  
SV-GI Manchester virus/93/UK CG 7431 X86560 Liu et al., 1995; Liu et al., 1997  
SV-GII London/29845/92/UK pol (p) 448 U67858 Berke et al., 1997  
pol(p)+capsid 3178 U95645 Jiang et al., 1997  
SV-GII Bristol          
SV Plymouth/92/UK 3' end of genome 2890 X86559 Liu et al., 1995  
SV Houston/DCC/86/US pol (p) 530 U67856 Matson et al., 1995  
pol(p)+capsid 3138 U95643 Jiang et al., 1997  
SV Vanderbijlpark/313616/93/SA pol (p) 370 U43287 Wolfaardt et al., unpublished (b)  
pol (p) 370 U67857 Berke et al., 1997  
SV Parkville/94/US pol(p)+capsid 3085 U73124 Noel et al., 1997  
SV Houston/27/90/US pol (p) 486 U67859 Berke et al., 1997  
pol(p)+capsid 3167 U95644 Jiang et al., 1997  
SV Pretoria/205430/92/SA pol (p) 370 U50824 Wolfaardt et al., unpublished (c)  
SV Pretoria/MK17/94/SA pol (p) 370 U50825 Wolfaardt et al., unpublished (c)  
SV Stockholm/318/97/SE capsid 1695 AF194182 Vinje et al., 1999  
 
Porcine enteric calicivirus (PEC) or porcine enteric sapovirus
Virus Strain Region

Length

Accession No.

Reference Comments
SV-GIII Cowden CG

7320

AF182760 Guo et al., 1999  
SV-GIII swine/sav1/2008/CHN (Ch-sw-sav1) CG 7558 FJ387164 Yang et al., 2009  
SV-GIII swine/ah-1/2009/CHN CG 7342 JX678943 Fan and Wang, 2012  
PEC LL14 CG 7291 AY425671 Chang et al., unpub.  
PEC Korean 6802 pol(p) 381 AY289186 Kim et al., unpub.  
PEC Korean 8402 pol(p) 381 AY289187 Kim et al., unpub.  
PEC Korean 10802 pol(p) 381 AY289188 Kim et al., unpub.  
PEC K7/JP CG 7144 AB221130 Yin et al., 2006  
PEC K10/JP pol(p)+capsid+ORF2 2972 AB221131 Yin et al., 2006  
PEC K8/JP capsid 1617 AB242873 Yin, unpub.  
PEC S20/JP capsid 1635 AB242875 Yin, unpub.  
PEC swine/YiY1/2006/PRC (pTPESCAP15) capsid 1635 EU381230 Yu et al., unpub.  
PEC swine/YiY1/2006/PRC (pETPESCAP18) capsid 1635 EU381231 Yu et al., unpub.  
PEC swine/Id3/2005/HUN pol(p)+capsid 2035 DQ383274 Reuter et al., 2010  
PEC swine/Pos6/2007/HUN pol(p)+capsid 2048 FJ808729 Reuter et al., 2010  
PEC swine/PoS7/2007/HUN pol(p) 286 FJ808730 Reuter et al., 2010  
PEC swine/PoS9/2007/HUN pol(p)+capsid 2079 FJ808731 Reuter et al., 2010  
             
 
Mink enteric calicivirus (MEC)
Virus Strain Region

Length

Accession No.

Reference Comments
MEC 1/1999/US pol(p)

315

AF338404

Guo et al., 2001  
             
Bat sapovirus (BSV)
Virus Strain Region

Length

Accession No.

Reference Comments
BSV bat/TLC34/HK CG 7679 JN899072 Tse et al., 2012  
BSV bat/TLC38/HK ORF1(p) 1130 JN899073 Tse et al., 2012  
BSV bat/TLC39/HK CG 7679 JN899074 Tse et al., 2012  
BSV bat/TLC58/HK CG 7696 JN899075 Tse et al., 2012  
BSV bat/TLC72/HK ORF1(p) 764 JQ267527 Tse et al., 2012  
             
California sea lion sapovirus 1 (CSLSV-1) and 2 (CSLSV-2)
Virus Strain Region

Length

Accession No.

Reference Comments
CSLSV-1 9775/California/2010 CG 7497 JN420370 Li et al., 2011a  
CSLSV-2 1136/California/2010 ORF1(p) 2166 JN420369 Li et al., 2011a  
             
Canine sapovirus (CaSV)
Virus Strain Region

Length

Accession No.

Reference Comments
CaSV dog/AN210D/USA/2009 CG 7469 JN387134 Li et al., 2011b  
CaSV dog/AN196/USA/2009 capsid(p) 2578 JN387135 Li et al., 2011b  
             
Chimpanzee sapovirus (ChSV) from Pan troglodytes
Virus Strain Region

Length

Accession No.

Reference Comments
ChSV chimp/IJC04/Tchimpounga/DRC/2011 CG(p) 7320 KJ858686 Mombo et al., unpub.  
ChSV chimp/IJC09/Tchimpounga/DRC/2011 CG(p) 7320 KJ858687 Mombo et al., unpub.  
             
 
CG = complete genome
(p) = partial gene sequence
N/A = not available on the EMBL/GenBank/DDBJ databases
   
 

References

Ando, T., Mulders, M.N., Lewis, D.C., Estes, M.K., Monroe, S.S. and Glass, R.I. (1994). Comparison of the polymerase region of small round structured virus strains previously classified in three antigenic types by solid-phase immune electron microscopy. Archives of Virology 135: 217-226.

Ando, T., Jin, Q., Gentsch, J.R., Monroe, S.S., Noel, J.S., Dowell, S.F., Cicirello, H.G., Kohn, M.A. and Glass, R.I. (1995). Epidemiologic applications of novel molecular methods to detect and differentiate small round structured viruses (Norwalk-like viruses). J. Med. Virol. 47:145-152(1995).

Berke, T., Golding, B., Jiang, X., Cubitt, D.W., Wolfaardt, M., Smith, A.W. and Matson, D.O. (1997). Phylogenetic analysis of the caliciviruses. J. Med. Virol. 52: 419-424.

Cauchi, M.R., Doultree, J.C., Marshall, J.A. and Wright, P.J. (1996). Molecular characterization of Camberwell virus and sequence variation in ORF3 of small round structured (Norwalk-like) viruses. J. Med. Virol., in press.

Chang, K.-O., Sosnovtsev, S., Belliot, G., Kim, Y., Saif, L.J. and Green, K.Y. Isolation and characterization of an additional porcine enteric calicivirus in LLC-PK cells. Unpublished. [NIAID-LID, NIH, 50 South Dr, Bethesda, MD 20892]

Cubitt, W.D., Jiang, X.J., Wang, J. and Estes, M.K (1994). Sequence similarity of human caliciviruses and small round structured viruses. J. Med. Virol. 43: 252-258.

Cubitt, W.D., Blacklow, N.R., Herrmann, J.E., Nowak, N.A., Nakata, S. and Chiba, S. (1987). Antigenic relationships between human caliciviruses and Norwalk virus. J. Infect. Dis.156: 806-813.

Dingle, K.E., Lambden, P.R., Caul, E.O. and Clarke, I.N. (1995). Human enteric caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round-structured virus. J. Gen. Virol. 76:2349-2355(1995).

Drebot, M.A. and Lee S.H.S. Human calicivirus (Norwalk-like virus) partial RNA polymerase gene. Unpublished. (Zoonotic Diseases, Bureau of Microbiology, Health Protection Branch, Health Canada, Tunney's Pasture, Ottawa, Ontario K1A 0L2, Canada)

Green S.M., Lambden P.R., Caul E.O., Ashley C.R., Clarke I.N. (1995). Caspid diversity in small round-structured viruses : molecular characterization of an antigenically distinct human enteric calicivirus. Virus Res. 37: 271-283.

Green, S.M., Dingle, K.E., Lambden, P.R., Caul, E.O., Ashley, C.R. and Clarke, I.N. (1994). Human enteric Caliciviridae: a new prevalent small round-structred group defined by RNA-dependent RNA polymerase and capsid diversity. J. Gen. Virol. 75: 1883-1888.

Green, S.M., Lambden, P.R., Caul, E.O. and Clarke, I.N. (1997). Capsid sequence diversity in small round structured viruses from recent
UK outbreaks of gastroenteritis. J. Med. Virol. 52: 14-19.

Guo, M., Chang, K.O., Hardy, M.E., Zhang, Q., Parwani, A.V. and Saif, L.J. (1999). Molecular characterization of a porcine enteric calicivirus genetically related to Sapporo-like human caliciviruses. J. Virol. 73: 9625-9631.

Guo, M., Evermann, J.F. and Saif, L.J. (2001). Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink. Arch. Virol. 146: 479-493.

Jiang, X., Wang, M., Wang, K. and Estes, M. (1993). Sequence and genomic organization of Norwalk virus. Virology 195: 51-61.

Jiang, X., Wang, J. and Estes, M.K. (1995a). Characterization of SRSVs using RT-PCR and a new antigen ELISA. Arch. Virol. 140: 363-374.

Jiang, X., Matson, D.O., Velazquez, R.F., Calva, J.J., Zhong, W., Palacios, G.M.R. and Pickering, L.K. (1995b). A Study of Norwalk-related viruses in Mexican children. J. Med. Virol. In press

Jiang, X., Cubitt, D.W., Berke, T., Zhong, W.M., Dai, X.M., Pickering, L.K. and Matson, D.O. (1997). Sapporo-like human caliciviruses are genetically and antigenically diverse. Arch. Virol. 142: 1813-1827.

Kim, H.J., Cho, H.S., Cho, K.O. and Park, N.Y. Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to Sapporo-like porcine caliciviruses. Unpublished. [Department of Veterinary Medicine, Chonnam National University, 300 Yongbongdong Bukgu, Gwangju 500-757, South Korea]

King, A.D. and Green, K.Y. (1997). Sequence analysis of gene encoding the capsid protein of the Snow Mountain human calicivirus. Virus Genes 15: 5-7.

Lambden, P.R., Caul, O., Ashley, C. and Clarke, I.N. (1993). Sequence and genome organization of a human small round structured (Norwalk-like) virus. Science 259: 516-519.

Lambden, P.R., Liu, B. and Clarke, I.N. (1995). A conserved sequence motif at the 5' terminus of the Southampton virus genome is characteristic of the Caliciviridae. Virus Genes 10: 149-152.

Lew, J.F., Kapikian, A.Z., Valdesuso, J. and Green, K.Y. (1994a). Molecular characterization of Hawaii virus and other Norwalk-like viruses: evidence for genetic polymorphism among human caliciviruses. J. Infect. Dis. 170: 535-542.

Lew, J.F., Kapikian, A.Z., Jiang, X., Estes, M.K. and Green, K.Y. (1994b). Molecular characterization and expression of the capsid protein of a Norwalk-like virus recovered from a Desert Sheild troop with gastroenteritis. Virology 200: 319-325.

Lew, J.F., Petric, M., Kapikian, A.Z., Jiang, X., Estes, M.K. and Green, K.Y. (1994c). Identification of Minireovirus as a Norwalk-like virus in pediatric patients with gastroenteritis. J. Virol. 68: 3391-3396.

Li, L., Shan, T., Wang, C., Cote, C., Kolman, J., Onions, D., Gulland, F.M. and Delwart, E. (2011a). The fecal viral flora of california sea lions. J. Virol. 85: 9909-9917.

Li, L., Pesavento, P.A., Shan, T., Leutenegger, C.M., Wang, C. and Delwart, E. (2011b). Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses. J. Gen. Virol. 92: 2534-2541.

Liu, B.L., Clarke, I.N., Caul, E.O. and Lambden, P.R. (1995). Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses. Arch. Virol. 140: 1345-1356.

Liu, B.L., Clarke, I.N., Caul, E.O. and Lambden, P.R. (1997). The genomic 5' terminus of Manchester calicivirus. Virus Genes 15: 25-28.

Matson, D.O., Zhong, W-M., Nakata, S., Numata, K., Jiang, X., Pickering, L.K., Chiba, S. and Estes, M.K. (1995). Molecular characterization of a human calicivirus with sequence relationships closer to animal caliciviruses than other known human caliciviruses. J. Med. Virol. 45: 215-222.

Matsui, S.M., Kim, J.P., Greenberg, H.B., Su, W., Sun, Q., Johnson, P.C., DuPont, H.L., Oshiro, L.S. and Reyes, G.R. (1991). The isolation and characterization of a Norwalk virus-specific cDNA. J. Clin. Invest. 87: 1456-1461.

Meekin, G.E. and Low A. Characterisation of SRSVs from New Zealand outbreaks of gastroenteritis. Unpublished. (Molecular Virology, ESR Communicable Disease Centre, Kenepuru Drive, Porirua, Wellington, New Zealand)

Moe, C.L., Gentsch, J., Ando, T., Grohmann, G.S., Monroe, S., Jiang, X., Wang, J., Estes, M.K., Seto, Y., Humphrey, C., Stine, S. and Glass, R.I. (1994). Application of PCR to detect Norwalk virus in fecal specimens from outbreaks of gastroenteritis. J. Clin. Microbiol. 32: 642-648.

Nakajima, S. and Sugieda, M. Calicivirus genomic RNA for RNA polymerase, partial cds. Unpublished. [Setsuko Nakajima, National Institute of Public Health, Microbiology; Shirokanedai, 4-6-1, Minato-ku, Tokyo 108, Japan (E-mail:nakajima@iph.go.jp, Tel:+81-03-3441-7111, Fax:+81-03-3446-4314)]

Nakayama, M., Ueda, Y., Kawamoto, H., Han-Jun, Y., Saito, K., Nishio, O. and Ushijima, H. (1996). Detection and sequencing of Norwalk-like viruses from stool samples in Japan using reverse transcription-polymerase chain reaction amplification. Microbiol. Immunol. 40: 317-320.

Noel, J.S., Liu, B.L., Humphrey, C.D., Rodriguez, E.M., Lambden, P.R., Clarke, I.N., Dwyer, D.M., Ando, T., Glass, R.I. and Monroe, S.S. (1997). Parkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults. J. Med. Virol. 52: 173-178.

Norcott, J.P., Green, J., Lewis, D., Estes, M.K., Barlow, K.L. and Brown, D.W. (1994). Genomic diversity of small round structured viruses in the United Kingdom. Journal of Medical Virology 44:280-286.

Numata, K., Hardy, M.E., Nakata, S., Chiba, S. and Estes, M.K. (1997). Molecular characterization of morphologically typical human calicivirus
Sapporo. Arch. Virol. 142: 1537-1552.

Regli, W.J., Green, D., Jones, N., Jarman, J., Lewis, G.D. and Dodd, A.A. Detection of an oyster associated Norwalk-like virus by RT-PCR. Unpublished.

Reuter, G., Zimsek-Mijovski, J., Poljsak-Prijatelj, M., Di Bartolo, I., Ruggeri, F.M., Kantala, T., Maunula, L., Kiss, I., Kecskemeti, S., Halaihel, N., Buesa, J., Johnsen, C., Hjulsager, C.K., Larsen, L.E., Koopmans, M. and Bottiger, B. (2010). Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J. Clin. Microbiol. 48: 363-368.

Saito, H., Kamada, K., Sato, H. and Morita, M. Molecular characterization of human calicivirus strains in viral gastroenteritis outbreak. Unpublished. (H. Saito, Akita Prefectural Institute of Public Health, Microbiology; 6-6 Senshu Kubotamachi, Akita, Akita 010, Japan. E-mail: SZB75178@pcvan.or.jp; Tel: 0188-32-5005; Fax: 0188-32-5938)

Schreier, E., Kuenkel, U., Hoehne, M. and Monroe, S. Detection of Norwalk-like viruses and other small-round structured viruses in Germany. Unpublished. (E. Schreier, Virology, Robert Koch-Institute, Nordufer 20 13353 Berlin, GERMANY.)

Stene-Johansen, K. and Grinde, B. (1996). Sensitive detection of human caliciviridae by RT-PCR.  J. Med. Virol. 50: 207-213.

Tse, H., Chan, W.M., Li, K.S., Lau, S.K., Woo, P.C. and Yuen, K.Y. (2012). Discovery and genomic characterization of a novel bat sapovirus with unusual genomic features and phylogenetic position. PLoS One. 7(4):e34987. Epub 2012 Apr 13.

Utagawa, E.T., Takeda, N., Inouye, S., Kasuga, K. and Yamazaki, S. (1994). 3'-terminal sequence of a small round structured virus (SRSV) in Japan. Archives of Virology 135: 185-192.

Vinje, J., Deijl, H., van der Heide, R., Lewis, D.C., Hedlund, K.-O., Svensson, L. and Koopmans M.P.G. (1999). Molecular detection and epidemiology of 'Sapporo-like viruses'. J. Clin. Microbiol. 0: 0-0.

Wang, J., Jiang, X., Madore, H.P., Desselberger, U., Gray, J., Ando, T., Seto, Y., Yamazaki, K., Oishi, I. and Estes, M.K. (1994). Sequence diversity of small round structured viruses in the Norwalk virus group. J. Virol. 68: 5982-5990.

Wolfaardt, M., Taylor, M.B., Grabow, W.O., Cubitt, W.D. and Jiang, X. (1995) Molecular characterisation of small round structured viruses associated with gastroenteritis in South Africa. J. Med. Virol. 47:386-391.

Wolfaardt, M., Taylor, M.B., Berke, T. and Jiang, X. Detection of human caliciviruses with sequence relationships closer to animal caliciviruses in South Africa. Unpublished (b) (Marianne Wolfaardt, Department of Medical Virology, Institute of Pathology, University of Pretoria, Dr. Savage Road, Pretoria, Gauteng 0001, South Africa).

Wolfaardt, M., Taylor, M.B., Berke, T., Matson, D.O. and Jiang, X. Sapporo-like Human Caliciviruses in South Africa. Unpublished (c).

Yin, Y., Tohya, Y., Ogawa, Y., Numazawa, D., Kato, K. and Akashi, H. (2006). Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch. Virol. 151: 1749-1759.

 

 
Copyright © 2006-2019 The Pirbright Institute, UK.