|
Genus: Vesivirus
Species: Vesicular
exanthema of swine virus (VESV)
- Serotypes:
vesicular exanthema of swine virus (VESV; 13 serotypes)
- San Miguel sea lion virus (SMSV; 16+ serotypes)
- bovine calicivirus (BCV; Bos-1,
Bos-2)
- primate calicivirus (PCV; Pan-1)
- cetacean calicivirus (CCV; Tur-1)
- skunk calicivirus (SCV)
rabbit calicivirus (RaCV)
- reptile calicivirus (RCV; Cro-1)
- walrus calicivirus (WCV)
Vesicular exanthema of swine virus (VESV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
VESV-B34 |
swine/B1-34/San
Jose/CA/1934
(aka 1934B) |
CG |
8329 |
KM269481 |
Logan et al., 2014 |
|
2C-like helicase(p) |
298 |
U18480 |
Neill et al., 1995 |
|
polymerase(p) |
295 |
U18736 |
Neill et al., 1995 |
|
VESV-A48 |
swine/Fontana/CA/1948 |
CG |
8284 |
U76874 |
Neill et al., 1998;
Neill et al., unpublished (b) |
|
2C-like helicase(p) |
357 |
U14678 |
Seal et al., 1995 |
|
2C-like helicase(p) |
357 |
U18481 |
Neill et al., 1995 |
|
polymerase(p) |
519 |
U14677 |
Seal et al., 1995 |
|
polymerase(p) |
520 |
U18737 |
Neill et al., 1995 |
|
capsid (region A) |
712 |
AJ131384 |
Reid et al., 1999 |
|
VESV-B51 |
swine/Davis/CA/1951 |
pol(p)+capsid(p) |
1668 |
DQ666632 |
Reid et al., 2007 |
|
VESV-C52 |
swine/San Francisco/CA/1952 |
2C-like helicase(p) |
295 |
U18482 |
Neill et al., 1995 |
|
polymerase(p) |
373 |
U18738 |
Neill et al., 1995 |
|
pol(p)+capsid(p) |
1668 |
DQ666633 |
Reid et al., 2007 |
|
VESV-D53 |
swine/Riverside/CA/1953 |
|
|
|
|
|
VESV-E54 |
swine/Warm Springs/CA/1954 |
2C-like helicase(p) |
301 |
U18483 |
Neill et al., 1995 |
|
polymerase(p) |
309 |
U18739 |
Neill et al., 1995 |
|
VESV-F55 |
swine/FS 330/San
Mateo/CA/1955 |
|
|
|
|
|
VESV-G55 |
swine/FS 332/San
Mateo/CA/1955 |
pol(p)+capsid(p) |
1668 |
DQ666637 |
Reid et al., 2007 |
|
VESV-H54 |
swine/FS 315/San
Mateo/CA/1954 |
|
|
|
|
|
VESV-I55 |
swine/GF 1/San
Mateo/CA/1955 |
2C-like helicase(p) |
298 |
U18484 |
Neill et al., 1995 |
|
polymerase(p) |
307 |
U18740 |
Neill et al., 1995 |
|
VESV-J56 |
swine/Sec. 3-56/Secaucus/NJ/1956 |
|
|
|
|
|
VESV-K54 |
swine/Sec. 3-54/Secaucus/NJ/1954 |
pol(p)+capsid(p) |
1668 |
DQ666634 |
Reid et al., 2007 |
|
|
|
|
|
|
|
|
San Miguel sea lion virus (SMSV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
SMSV-1 |
csl/1MR/San
Miguel Is./CA/1972 |
pol(p), complete capsid |
2745 |
M87481 |
Neill, 1992 |
|
CG |
8284 |
U15301 |
Neill et al., 1995;
Neill et al., unpublished (a) |
|
SMSV-2 |
csl/2MR/San
Miguel Is./CA/1972 |
2C-like helicase(p) |
357 |
U18476 |
Neill et al., 1995 |
|
polymerase(p) |
520 |
U18730 |
Neill et al., 1995 |
|
capsid (region A) |
564 |
U76881 |
Neill et al., 1998 |
|
capsid (region A) |
593 |
AJ131385 |
Reid et al., 1999 |
|
capsid (region E) |
660 |
U76882 |
Neill et al., 1998 |
|
pol(p)+capsid(p) |
1668 |
DQ666629 |
Reid et al., 2007 |
|
SMSV-3 was later shown to be a
mixture of SMSV-1 and SMSV-2 |
SMSV-4 |
csl/15FT/San
Miguel Is./CA/1973 |
pol(p) + complete capsid |
2744 |
M87482 |
a) Neill, 1992 |
|
non-struct. genes |
3653 |
U15302 |
b) Neill et al., 1995 |
|
2C |
357 |
U14673 |
c) Seal et al., 1995 |
|
pol |
519 |
U14674 |
d) Seal et al., 1995 |
|
capsid (region A) |
543 |
AJ131386 |
Reid et al., 1999 |
|
pol(p)+capsid(p) |
1668 |
DQ666630 |
Reid et al., 2007 |
|
SMSV-5 |
nfs/205/St.
Paul Is./AK/1973 |
2C-like helicase(p) |
357 |
U18477 |
Neill et al., 1995 |
|
polymerase(p) |
520 |
U18731 |
Neill et al., 1995 |
|
polymerase(p) |
453 |
U52093 |
Matson et al., 1996 |
|
capsid (region A) |
520 |
U76883 |
Neill et al., 1998 |
|
capsid (region E) |
678 |
U76884 |
Neill et al., 1998 |
|
3C-like |
280 |
DQ300285 |
Smith et al., 2006 |
|
human/EB-1/Corvallis/OR/1987
(Hom-1) |
pol(p) |
453 |
U62327 |
Smith et al.,
1998 |
|
CG |
8399 |
KY114613 |
Sosnovtsev et al., 2017 |
|
human/4 |
capsid (region E) |
435 |
DQ300286 |
Smith et al., 2006 |
|
SMSV-6 |
csl/439/San
Miguel Is./CA/1975 |
2C-like helicase(p) |
357 |
U18478 |
Neill et al., 1995 |
|
polymerase(p) |
419 |
U18732 |
Neill et al., 1995 |
|
capsid (region A) |
520 |
U76885 |
Neill et al., 1998 |
|
capsid (region A) |
671 |
AJ131387 |
Reid et al., 1999 |
|
capsid (region E) |
675 |
U76886 |
Neill et al., 1998 |
|
SMSV-7 |
perch/Gn-21/San Nicholas Is./CA/1976 |
2C-like helicase(p) |
357 |
U18479 |
Neill et al., 1995 |
|
polymerase(p) |
414 |
U18733 |
Neill et al., 1995 |
|
capsid (region A) |
508 |
U76887 |
Neill et al., 1998 |
|
capsid (region E) |
676 |
U76888 |
Neill et al., 1998 |
|
SMSV-8 |
not a member of the VESV species |
|
|
|
|
|
SMSV-9 |
csl/427T/San Miguel
Is./CA/1975 |
polymerase(p) |
450 |
U52090 |
Matson et al., 1996 |
|
csl/P163N/San
Miguel Is./CA/1992 |
capsid |
2124 |
AY772539 |
Zintz
et al., unpublished |
|
csl/P127N/San
Miguel Is./CA/1992 |
capsid |
2132 |
AY772543 |
Zintz
et al., unpublished |
|
csl/P163R/San
Miguel Is./CA/1992 |
capsid |
2120 |
AY772544 |
Zintz
et al., unpublished |
|
SMSV-10 |
nfs/V-31-77/St.
Paul Is./AK/1977 |
pol(p)+capsid(p) |
1668 |
DQ666631 |
Reid et al., 2007 |
|
SMSV-11 |
nfs/804T/San Miguel
Is./CA/1977 |
|
|
|
|
|
SMSV-12 |
not a member of the VESV species |
|
|
|
|
|
SMSV-13 |
csl/CSL-461/Fort
Cronkhite/CA/1984 |
2C-like helicase(p) |
357 |
U18474 |
Neill et al., 1995 |
|
polymerase(p) |
543 |
U18734 |
Neill et al., 1995 |
|
polymerase(p) |
450 |
U52087 |
Matson et al., 1996 |
|
capsid (region A) |
447 |
U76877 |
Neill et al., 1998 |
|
capsid (region A) |
723 |
AJ131388 |
Reid et al., 1999 |
|
capsid (region E) |
607 |
U76878 |
Neill et al., 1998 |
|
pol(p)+capsid(p) |
1668 |
DQ666636 |
Reid et al., 2007 |
|
SMSV-14 |
csl/A1280/San
Miguel Is./CA/1987 |
2C-like helicase(p) |
357 |
U18475 |
Neill et al., 1995 |
|
polymerase(p) |
436 |
U18735 |
Neill et al., 1995 |
|
capsid (region A) |
520 |
U76879 |
Neill et al., 1998 |
|
capsid (region E) |
666 |
U76880 |
Neill et al., 1998 |
|
SMSV-15 |
csl/220R/San Miguel
Is./CA/1988 |
polymerase(p) |
453 |
U52088 |
Matson et al., 1996 |
|
SMSV-16 |
csl/Zc-698/San Diego/CA/1988 |
polymerase(p) |
453 |
U52089 |
Matson et al., 1996 |
|
SMSV-17 |
csl/Zc-91PG/San
Miguel Is./CA/1991 |
polymerase(p) |
453 |
U52094 |
Matson et al., 1996 |
|
capsid |
2650 |
U52005 |
Matson et al., 1996 |
|
SMSV-9221 |
csl/9221/CA/2009 |
capsid (region A) |
723 |
JX244193 |
Wright et al., unpub. |
|
|
|
|
|
|
|
|
Bovine calicivirus (BCV)
- Bos-1 |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
BCV |
cattle/217T/Tillamook/OR/1981 |
2C-like helicase(p) |
357 |
U18470 |
Neill et al., 1995 |
|
polymerase(p) |
520 |
U18741 |
Neill et al., 1995 |
|
capsid (region A) |
427 |
U76875 |
Neill et al., 1998 |
|
capsid (region E) |
666 |
U76876 |
Neill et al., 1998 |
|
|
|
|
|
|
|
|
Bovine calicivirus (BCV) - Bos-2 |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
BCV |
cattle/Bos-2 |
polymerase(p) |
448 |
AY069947 |
Smith et al., 2002 |
|
|
|
|
|
|
|
|
California sea lion vesivirus
(CSLV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
CSLV |
csl/02012181/CA |
pol(p)+capsid(p) |
1668 |
DQ666635 |
Reid et al., 2007 |
|
|
|
|
|
|
|
|
Cetacean calicivirus (CCV)
- Tur-1 |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
CCV |
dolphin/78-0041/San Diego/CA/1979 |
2C-like helicase(p) |
301 |
U18471 |
Neill et al., 1995 |
|
polymerase(p) |
453 |
U52091 |
Matson et al., 1996 |
|
|
|
|
|
|
|
|
Primate calicivirus (PCV)
- Pan-1 |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
PCV |
gorilla/78-0022/San Diego/CA/1979 |
2C-like helicase(p) |
301 |
U18472 |
Neill et al., 1995 |
|
polymerase(p) |
489 |
U18742 |
Neill et al., 1995 |
|
PCV |
chimp/78-0029/San
Diego/CA/1978 |
CG |
8304 |
AF091736 |
Rinehart-Kim et al., 1998 |
|
polymerase(p) |
453 |
U52086 |
Matson et al., 1996 |
|
|
|
|
|
|
|
|
Rabbit calicivirus (RaCV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
RaCV |
rabbit/S-4/OR/1996 |
CG |
8380 |
AJ866991 |
Martin Alonso et al., 2005 |
|
|
|
|
|
|
|
|
Reptile calicivirus (RCV)
- Cro-1 |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
RCV |
rattlesnake/78-0002/San Diego/CA/1978 |
polymerase(p) |
453 |
U52092 |
Matson et al., 1996 |
|
capsid |
2118 |
AY772542 |
Zintz et al., unpublished |
|
RCV |
viper/78-0023/San Diego/CA/1978 |
capsid |
2133 |
AY772538 |
Zintz et al., unpublished |
|
RCV |
rattlesnake/78-0010/San Diego/CA/1978 |
capsid |
2118 |
AY772540 |
Zintz et al., unpublished |
|
RCV |
rattlesnake/78-0003/San Diego/CA/1978 |
capsid |
2130 |
AY772541 |
Zintz et al., unpublished |
|
RCV |
rattlesnake/780032I/San Diego/CA/1978 |
CG |
8306 |
JX047864 |
Sandoval-Jaime et al., 2012 |
|
|
|
|
|
|
|
|
Skunk calicivirus (SCV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
SCV |
skunk/original |
2C-like helicase(p) |
357 |
U18473 |
Neill et al., 1995 |
|
polymerase(p) |
520 |
U18743 |
Neill et al., 1995 |
|
SCV |
skunk/4-1L |
2C(p) |
357 |
U14667 |
Seal et al., 1995 |
large plaque of isolate 4 |
polymerase(p) |
519 |
U14668 |
Seal et al., 1995 |
SCV |
skunk/4-2S |
2C(p) |
357 |
U14669 |
Seal et al., 1995 |
small plaque of isolate 4 |
polymerase(p) |
519 |
U14670 |
Seal et al., 1995 |
SCV |
skunk/7-2L & 7-3L |
2C(p) |
357 |
U14671 |
Seal et al., 1995 |
two large plaques of isolate 7 |
polymerase(p) |
519 |
U14672 |
Seal et al., 1995 |
|
|
|
|
|
|
|
Steller sea lion vesivirus (SSLV-V810) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
SSLV-V810 |
SSL2002-379SE |
CG |
8302 |
EF193004 |
McClenahan et al., 2008 |
USA: Alaska, SW Brothers |
|
|
|
|
|
|
|
Steller sea lion vesivirus (SSLV-V1415) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
SSLV-V1415 |
SSL2004-250F |
CG |
8305 |
EF195384 |
McClenahan et al., 2008 |
USA: Alaska, Cape Horn Rocks |
|
|
|
|
|
|
|
Walrus calicivirus (WCV) |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
WCV |
walrus/7420/Chukchi Sea/1977 |
CG |
8289 |
AF321298 |
Ganova-Raeva et al., 2004 |
|
|
|
|
|
|
|
|
Untyped |
Virus |
Strain |
Region |
Length |
Accession No. |
Reference |
Comments |
Untyped |
N102 (human) |
pol(p) |
113 |
DQ300287 |
Smith et al., 2006 |
|
Untyped |
N104 (human) |
pol(p) |
113 |
DQ300288 |
Smith et al., 2006 |
|
Untyped |
214 (human) |
pol(p) |
113 |
DQ300289 |
Smith et al., 2006 |
|
Untyped |
298 (human) |
pol(p) |
112 |
DQ300290 |
Smith et al., 2006 |
|
Untyped |
310 (human) |
pol(p) |
113 |
DQ300291 |
Smith et al., 2006 |
|
Untyped |
N330 (human) |
pol(p) |
113 |
DQ300292 |
Smith et al., 2006 |
|
|
|
|
|
|
|
|
CG = complete genome
(p) = partial gene sequence
N/A = not
available on the EMBL/GenBank/DDBJ databases
csl, California se lion
nfs, Northern fur seal
ssl, Steller sea lion |
References
Ganova-Raeva, L., Smith, A.W., Fields, H. and
Khudyakov, Y. (2004). New calicivirus isolated from walrus. Virus Res. 102:
207-213.
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(2014). A universal protocol to generate consensus level genome sequences for
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